The 48th Annual Meeting of the Molecular Biology Society of Japan
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Session Details

Symposium

[2AS-09]【J】Omics Data Based on New Methods Opens the Frontiers of Life Science

Thu. Dec 4, 2025 9:00 AM - 11:00 AM JST
Thu. Dec 4, 2025 12:00 AM - 2:00 AM UTC
Room 9(Pacifico Yokohama Conference Center 4F, 411+412)
Organizer: Takashi Ito (Kyushu University)
With the emergence of new experimental technologies and the development of analytical methods, the environment surrounding life science research has always been drastically changing. Public databases play an important role in these changes, and have been responding to a variety of research needs. In this symposium, we will introduce new databases for spatial transcriptomics and long-read genomics, and discuss the frontiers of life science explored by research approaches utilizing these databases.
9:00 AM - 9:02 AM JST(12:00 AM - 12:02 AM UTC)

Introduction

9:02 AM - 9:21 AM JST(12:02 AM - 12:21 AM UTC)

[2AS-09-01]Developments and challenges in spatial / single-cell omics technologies

○Yukie Kashima1 (1. Graduate School of Frontier Sciences, The University of Tokyo)
Comment()
9:21 AM - 9:24 AM JST(12:21 AM - 12:24 AM UTC)

Q & A for Each Presentation

9:24 AM - 9:43 AM JST(12:24 AM - 12:43 AM UTC)

[2AS-09-02]DeepSpaceDB: an interactive database for in-depth exploration of spatial transcriptomics samples

Vladyslav Honcharuk1, Afeefa Zainab1, Yoshiya Horimoto2,3, Keiko Takemoto1, Diego Diez4, Shinpei Kawaoka1,5, ○Alexis Vandenbon1,6 (1. Institute for Life and Medical Sciences, Kyoto University, 2. Department of Breast Surgery and Oncology, Tokyo Medical University Hospital, 3. Department of Human Pathology, Juntendo University Faculty of Medicine, 4. Immunology Frontier Research Center, Osaka University, 5. Institute of Development, Aging and Cancer, Tohoku University, 6. Graduate School of Biostudies, Kyoto University)
Comment()
9:43 AM - 9:46 AM JST(12:43 AM - 12:46 AM UTC)

Q & A for Each Presentation

9:46 AM - 9:57 AM JST(12:46 AM - 12:57 AM UTC)

[2AS-09-03(2P-285)]Robustness Evaluation of Ultrahigh-speed Bottom-up Proteomics and its Application to Human Plasma Proteome Analysis

○Ayana Tomioka1, Ryota Tomioka1, Eisuke Kanao1,2, Kosuke Ogata1, Koshi Imami1,3, Naoyuki Sugiyama1,4, Yasushi Ishihama1 (1. Grad. Sch. of Pharm. Sci., Kyoto Univ., 2. NIBN, 3. RIKEN IMS, 4. NCVC)
Comment()
9:57 AM - 10:00 AM JST(12:57 AM - 1:00 AM UTC)

Q & A for Each Presentation

10:00 AM - 10:19 AM JST(1:00 AM - 1:19 AM UTC)

[2AS-09-04]Genome analysis of difficult-to-sequence regions (dark genomes) using target long-read sequencing methods

○Yoko Kuroki1 (1. National Center for Child Health and Development)
Comment()
10:19 AM - 10:22 AM JST(1:19 AM - 1:22 AM UTC)

Q & A for Each Presentation

10:22 AM - 10:41 AM JST(1:22 AM - 1:41 AM UTC)

[2AS-09-05]JoGo: Joint Open Genome and Omics Platform and ACTG-Haplotype Database

○Masao Nagasaki1,2, Yosuke Kawai3 (1. Kyushu Univ., 2. Kyoto Univ., 3. JIHS)
Comment()
10:41 AM - 10:44 AM JST(1:41 AM - 1:44 AM UTC)

Q & A for Each Presentation

10:44 AM - 10:55 AM JST(1:44 AM - 1:55 AM UTC)

[2AS-09-06(2P-037)]Microbiome Datahub: Integrating metagenomes and single-cell genomes of microbes

○Hiroshi Mori1, Takatomo Fujisawa1, Koichi Higashi1, Zennichi Nakagawa2, Hiroyo Nishide3, Motomu Matsui4, Takuji Yamada2, Ikuo Uchiyama3 (1. National Institute of Genetics, 2. Science Tokyo, 3. National Institute for Basic Biology, 4. Kyoto University)
Comment()
10:55 AM - 10:58 AM JST(1:55 AM - 1:58 AM UTC)

Q & A for Each Presentation

10:58 AM - 11:00 AM JST(1:58 AM - 2:00 AM UTC)

Conclusion

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