Biophysical Society of Japan

[1SAA-00]Opening Remarks

[1SAA-1]Development of a new machine-learning method to design high functional proteins and an application for the color tuning of rhodopsins

〇Keiichi Inoue(1.Inst. Solid State Phys.)

[1SAA-2]Data-Driven Prediction for Absorption Wavelengths of Microbial Rhodopsins by using Machine Learning Approaches

〇Masayuki Karasuyama(1.Nagoya Institute of Technology)

[1SAA-3]Development of methodologies for obtaining a large dataset of structures and membrane permeability of cyclic peptides

〇Jumpei Morimoto(1.Grad. Sch. Eng., Univ. Tokyo)

[1SAA-4]Mega-scale experimental analysis of protein folding stability in biology and protein design

〇Kotaro Tsuboyama^1,2, Gabriel Rocklin²(1.IIS UTokyo, 2.Northwestern Univ.)

[1SAA-5]BioDOS: AI Inference engine for Bio-design automation of genetic network

〇Daisuke Kiga¹, Sota Okuda¹, Kazuteru Miyazaki², Naoki Kodama³, Masayuki Yamamura⁴(1.Dept Elect Eng and Biosci, Waseda Univ, 2.Nation. Inst. for Acad. Deg. & Quality Enhance. of High. Edu., 3.Sch. Sci. and Tech., Meiji Univ., 4.Sch. Comput., Tokyo tech)

[1SAA-99]Closing Remarks

[1SBA-00]Opening Remarks

[1SBA-1]DNA-segment Capture by SMC Complex –A Coarse-grained Simulation Study–

〇Masataka Yamauchi, Tsuyoshi Terakawa, Giovanni Bruno Brandani, Shoji Takada(1.Dept. of Biophysics, Grad. of Sci., Kyoto Univ.)

[1SBA-2]Direct visualization of DNA-bound cohesin by HS-AFM

〇Yumiko Kurokawa^1,2, Kenichi Umeda³, Noriyuki Kodera³, Yasuto Murayama^1,2(1.Dept. of Chrom. Sci., Nat. Inst. of Genetics, 2.Dept. of Genetics, SOKENDAI, 3.WPI-NanoLSI, Kanazawa Univ.)

[1SBA-3]Formation of chromatin loops by cohesin dimerization over molecular obstacles

〇Shin Fujishiro(1.Fukui Institute for Fundamental Chemistry, Kyoto University)

[1SBA-4]Replication-dependent histone (Repli-Histo) labeling revealed that chromatin motion can determine DNA replication timing

〇Katsuhiko Minami^1,2, Satoru Ide^1,2, Sachiko Tamura¹, Masato T. Kanemaki^1,2, Kazuhiro Maeshima^1,2(1.National Institute of Genetics, 2.Graduate Institute for Advanced Studies, SOKENDAI)

[1SBA-5]Design, control, and application of liquid-liquid phase separation of genome-sized nucleic-acid assembly

〇Masahiro Takinoue^1,2,3(1.Dept. Compt. Sci., Tokyo Tech, 2.Dept. Life Sci. Tech., Tokyo Tech, 3.LiSM, IRFI, Tokyo Tech)

[1SBA-6]A loop extrusion-independent mechanism contributes to chromosome shaping by the condensin complexes

〇Kazuhisa Kinoshita(1.Chromosome Dynamics Lab., RIKEN)

[1SBA-7]Elasticity control of entangled chromosomes: crosstalk between condensin complexes and nucleosomes

〇Yamamoto Tetsuya¹, Kinoshita Kazuhisa², Hirano Tatsuya²(1.ICReDD, Hokkaido Univ., 2.Riken)

[1SCA-00]Opening Remarks

[1SCA-1]Morphological transitions of lipid vesicles driven by the contraction of cortical actomyosin networks

〇Makito Miyazaki^1,2,3(1.Grad. Sch. Sci., Kyoto Univ., 2.RIKEN BDR, 3.PRESTO, JST)

[1SCA-2]Spatial organization of cytoplasm directed by the cytoskeleton in human cell extracts

〇Shohei Yamamoto, Daiju Kitagawa(1.Grad. Sch. Pharma. Sci., Univ. Tokyo)

[1SCA-3]Intercellular tension generated by cadherin-actomyosin interaction ensures robust morphogen gradient formation

〇Kana Aoki, Taiki Higuchi, Tohru Ishitani(1.Dept. of Homeostatic regulation, RIMD, Osaka Univ.)

[1SCA-4]The rings of power to rule organelles: mechanism of force generation by the organelle division ring

〇Yamato Yoshida^1,2(1.Dept. of Biol. Sci., Grad. Sch. Sci., Univ. of Tokyo, 2.JST PRESTO)

[1SCA-5]Plant cytoskeletal dynamics at the nuclear periphery

〇Kentaro Tamura(1.Sch. Food Nutr., Univ. Shizuoka)

[1SCA-6]Dynamics of nuclear lamins during early embryonic development

〇Yuta Shimamoto^1,2(1.Nat'l Inst Genetics, 2.SOKENDAI)

[1SCA-99]Closing Remarks

[1SDA-00]Opening Remarks

[1SDA-1]Photocyclic animal opsins break the boundary between animal and microbial opsins

〇Takahiro Yamashita(1.Grad. Sch. of Sci., Kyoto Univ.)

[1SDA-2]Bestrhodopsin: a novel light-gated anion channel with unique photoreaction

〇Masae Konno(1.ISSP, Univ. Tokyo)

[1SDA-3]Optical control of apoptotic cell death by a proton pump rhodopsin

〇Keiichi Kojima, Yuki Sudo(1.Fac. Med. Dent. Pharm. Sci. Okayama Univ.)

[1SDA-4]Diversity of animal rhodopsin and optical control of GPCR signaling by bistable animal rhodopsins in a molecular property-dependent manner

〇Mitsumasa Koyanagi^1,2(1.Grad. Sch. Sci., Osaka Met. Univ., 2.OMU Adv. Res. Ins. Nat. Sci. Tech., Osaka Met. Univ.)

[1SDA-5]Welcome to the Visual Restoration Gene Therapy Development World

〇Yusaku Katada^1,2(1.Med., Keio Univ., 2.Restore Vision Inc.)

[1SDA-6]Development of gene therapy for vision restoration by using a channelrhodopsin with high light sensitivity

〇Satoshi Tsunoda^1,2(1.Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, 2.OptoBioTechnology Research Center, Nagoya Institute of Technology)

[1SDA-99]Closing Remarks

[1SEA-00]Opening Remarks

[1SEA-1]Data assimilation analysis of myosin V walking: High-speed atomic force microscopy data and molecular simulations

〇Sotaro Fuchigami¹, Yasuhiro Matsunaga², Shoji Takada³(1.Sch. Pharm. Sci., Univ. Shizuoka, 2.Grad. Sch. Sci. Eng., Saitama Univ., 3.Grad. Sch. Science, Kyoto Univ.)

[1SEA-2]End-to-end differentiable blind tip reconstruction for noisy atomic force microscopy images

〇Yasuhiro Matsunaga(1.Grad. Sch. Sci. Eng., Saitama Univ.)

[1SEA-3]Protein dynamics by the combination of high-speed AFM and computational modeling

Holger Flechsig(1.Nano Life Science Institute (WPI-NanoLSI), Kanazawa University)

[1SEA-4]Visulalization of microtubule severing by High-speed AFM

〇Marina Ohno¹, Hayato Shibuya¹, Noriyuki Kodera², Ikuko Hayashi¹(1.Grad. Sch. Med. Lif. Sci., Yokohama City Univ., 2.NanoLSI, Kanazawa Univ.)

[1SEA-5]Structure and dynamics of oligomers of the TIR domain of MyD88

〇Hidehito Tochio(1.Grad. Sch. Sci., Kyoto Univ.)

[1SEA-6]Sub-molecular-scale observation of Structural Maintenance of Chromosomes complexes by high-speed AFM

〇Kenichi Umeda^1,2, Yumiko Kurokawa³, Yasuto Murayama^2,3, Noriyuki Kodera¹(1.WPI-NanoLSI, Kanazawa Univ., 2.JST-PRESTO, 3.Nat. Inst. Genetics)

[1SEA-99]Closing Remarks

[1SFA-00]Opening Remarks

[1SFA-1]Mechanical Work Generation at Early Stage of ATP Hydrolysis in Myosin

〇Ikuo Kurisaki¹, Madoka Suzuki²(1.Waseda Research Institute for Science and Engineering, 2.Institute for Protein Research, Osaka University)

[1SFA-2]Spaciotemporal mapping of vibrational energy flow in proteins

〇Misao Mizuno(1.Grad. Sch. Sci., Kyoto Univ.)

[1SFA-3]Nanothermometry and local heating of lipid membranes using synthetic dyes

〇Satoshi Arai, Takeru Yamazaki, Vu Cong Quang(1.WPI-NanoLSI, Kanazawa univ.)

[1SFA-4]Dynamics and function of stress-activated MAPK signaling in determining cell fates

〇Taichiro Tomida, Yoshinori Mikami, Daisuke Ohshima, Yuuto Tei, Satomi Adachi-Akahane(1.Dept. Physiology, Fac. Med., Toho Univ.)

[1SFA-5]An engineering approach to investigate the various adaptive behavior derived from the interaction between the body and the environment

〇Yasuhiro Sugimoto(1.Grad. Sch. of Eng., Osaka Univ.)

[1SFA-99]Closing Remarks

[1SGA-1]Single Molecule Biophysical Studies Using Nanopore Sensing: History and Basic Principles

〇Hirohito Yamazaki(1.TRI, Nagaoka Univ. Tech.)

[1SGA-2]Engineered Nanostructures for Single-Protein Characterisation

〇Cuifeng Ying(1.Dept. of Eng., Sch. of Sci. & Tech., Nottingham Trent Univ., UK)

[1SGA-3]Physically insertion of DNA nanopores into liposomes using nanopore-modified microelectrodes

〇Hiroki Koiwa¹, Shin-ichiro Nomura², Satoshi Murata², Kan Shoji¹(1.Graduate School of Engineering, Nagaoka University of Technology, 2.Graduate School of engineering, Tohoku University)

[1SGA-4]Molecular Dynamics Study of Ion Transport Through Membrane-Spanning DNA Nanopores

〇Takuya Mabuchi(1.Tohoku University)